Index

A

ascent() (in module cellphe.features.time_series)

B

balance_training_set() (in module cellphe.segmentation.seg_errors)

boundary_vertices() (in module cellphe.processing.roi)

C

calculate_density() (in module cellphe.features.frame) calculate_trajectory_area() (in module cellphe.features.time_series) cell_features() (in module cellphe.features.frame) cellphe module cellphe.features module cellphe.features.frame module cellphe.features.helpers module cellphe.features.time_series module cellphe.processing module cellphe.processing.image module

cellphe.processing.roi module cellphe.segmentation module cellphe.segmentation.seg_errors module centroid (cellphe.processing.image.SubImage attribute) cooccurrence_matrix() (in module cellphe.features.frame) create_type_mask_fill_polygon() (in module cellphe.processing.image) create_type_mask_flood_fill() (in module cellphe.processing.image) create_type_mask_flood_fill_negative() (in module cellphe.processing.image) create_type_mask_matplotlib() (in module cellphe.processing.image) create_type_mask_ray_cast_4() (in module cellphe.processing.image) create_type_mask_skimage() (in module cellphe.processing.image) curvature() (in module cellphe.features.frame)

D

descent() (in module cellphe.features.time_series)

double_image() (in module cellphe.features.frame)

E

extract_static_features() (in module cellphe.features.frame)

extract_subimage() (in module cellphe.processing.image)

F

find_crossing_points() (in module cellphe.processing.image)

G

get_corner_mask() (in module cellphe.processing.roi)

get_diagonals() (in module cellphe.processing.roi) get_frame_id_from_filename() (in module cellphe.features.frame)

H

haar_approximation_1d() (in module cellphe.features.time_series)

haar_approximation_2d() (in module cellphe.features.frame) haralick() (in module cellphe.features.frame)

I

intensity_quantiles() (in module cellphe.features.frame)

interpolate() (in module cellphe.features.time_series) interpolate_between_points() (in module cellphe.processing.roi)

M

minimum_box() (in module cellphe.features.frame) module cellphe cellphe.features cellphe.features.frame cellphe.features.helpers cellphe.features.time_series cellphe.processing cellphe.processing.image cellphe.processing.roi cellphe.segmentation cellphe.segmentation.seg_errors

N

normalise_image() (in module cellphe.processing.image)

P

polygon() (in module cellphe.features.frame) polygon_angle() (in module cellphe.features.frame)

polygon_features() (in module cellphe.features.frame) predict_segmentation_errors() (in module cellphe.segmentation.seg_errors)

R

remove_predicted_seg_errors() (in module cellphe.segmentation.seg_errors)

roi_corners() (in module cellphe.processing.roi)

S

save_rois() (in module cellphe.processing.roi) skewness() (in module cellphe.features.helpers)

skewness_positive() (in module cellphe.features.time_series) sub_image (cellphe.processing.image.SubImage attribute) SubImage (class in cellphe.processing.image)

T

time_series_features() (in module cellphe.features.time_series)

type_mask (cellphe.processing.image.SubImage attribute)

V

var_from_centre() (in module cellphe.features.frame)

W

wavelet_features() (in module cellphe.features.time_series)